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资源说明：Work with genomic file formats in a consistent, simple and performant fashion
= bio-genomic-file Description goes here. == Supported Formats * Bed / BigBed * BedGraph * GFF * SAM / BAM * MACS Peak Calls * Wiggle / BigWig * TwoBit == External Requirements All required executables must be available in the $PATH. * UCSC Tools (http://hgdownload.cse.ucsc.edu/admin/exe) * Tabix (http://samtools.sourceforge.net/tabix.shtml) * Standard Unix utilities: grep, which, head, tail, cat, etc. * SAMTools (only necessary if working with BAM files, http://samtools.sourceforge.net) == Setup === As a Gem Install with RubyGems: $ gem install bio-genomic-file or add to your project's Bundler Gemfile: $ gem 'bio-genomic-file', :git => git://github.com/timpalpant/bioruby-genomic-file.git === For Development Checkout the source tree with git: $ git clone git://github.com/timpalpant/Ruby-Genomics.git Use bundler to install the rest of the requirements: $ cd Ruby-Genomics $ bundle install Run the specs to ensure that everything is set up correctly: $ rake == Examples == To-Do * Check for external dependencies during install and warn/error if they cannot be found == Contributing to bio-genomic-file * Check out the latest master to make sure the feature hasn't been implemented or the bug hasn't been fixed yet * Check out the issue tracker to make sure someone already hasn't requested it and/or contributed it * Fork the project * Start a feature/bugfix branch * Commit and push until you are happy with your contribution * Make sure to add tests for it. This is important so I don't break it in a future version unintentionally. * Please try not to mess with the Rakefile, version, or history. If you want to have your own version, or is otherwise necessary, that is fine, but please isolate to its own commit so I can cherry-pick around it. == Copyright Copyright (c) 2011 timpalpant. See LICENSE.txt for further details.
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